Disease ID | Disease name | Source of annotation with EFEMP2 | OMIM link | Number of associated genes | genes |
---|---|---|---|---|---|
219100 | CUTIS LAXA, AUTOSOMAL RECESSIVE, TYPE IA | ClinVar | link to OMIM | 2 | EFEMP2, FBLN5 |
614437 | CUTIS LAXA, AUTOSOMAL RECESSIVE, TYPE IB | ClinVar, OMIM, HUMSAVAR | link to OMIM | 1 | EFEMP2 |
Download the gene annotation in CSV format
REACTOME pathway | REACTOME ID | REACTOME IC |
---|---|---|
Elastic fibre formation | R-HSA-1566948 | 7.49 |
Extracellular matrix organization | R-HSA-1474244 | 4.91 |
Molecules associated with elastic fibres | R-HSA-2129379 | 7.73 |
GO term | GO ID | GO IC |
---|---|---|
cation binding | GO:0043169 | 1.4 |
extracellular matrix structural constituent | GO:0005201 | 5.37 |
metal ion binding | GO:0046872 | 1.41 |
ion binding | GO:0043167 | 1.36 |
binding | GO:0005488 | 0.18 |
protein binding | GO:0005515 | 0.46 |
structural molecule activity | GO:0005198 | 3.1 |
calcium ion binding | GO:0005509 | 3.17 |
<type 'exceptions.KeyError'> | Python 2.7.9: /usr/bin/python Fri Mar 29 11:10:55 2024 |
A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.
/usr/lib/cgi-bin/gene_disease_db/gene.py in |
475 kegg_ann(gene) |
476 react_ann(gene) |
=> 477 GOBPs,GOCCs=GO_ann(gene) |
478 if make_file==True: |
479 outcsv.close() |
GOBPs undefined, GOCCs undefined, GO_ann = <function GO_ann>, gene = 'EFEMP2' |
/usr/lib/cgi-bin/gene_disease_db/gene.py in GO_ann(gene='EFEMP2') |
345 print '<summary id="missing"> Associated GO terms for '+root2root_names[root]+' </summary>' |
346 print '</details>' |
=> 347 return root2GO["biological_process"],root2GO["cellular_component"] |
348 |
349 def kegg_ann(gene): |
root2GO = {'cellular_component': set(['GO:0005576', 'GO:0005604', 'GO:0031982', 'GO:0031988', 'GO:0043226', 'GO:0043227', ...]), 'molecular_function': set(['GO:0005198', 'GO:0005201', 'GO:0005488', 'GO:0005509', 'GO:0005515', 'GO:0043167', ...])} |
<type 'exceptions.KeyError'>: 'biological_process'
args =
('biological_process',)
message =
'biological_process'