| Global Genomic NER (GG-NER) | R-HSA-109970 | 7.89 |
| Dual incision reaction in TC-NER | R-HSA-110304 | 8.12 |
| Formation of transcription-coupled NER (TC-NER) repair complex | R-HSA-110302 | 8.12 |
| Transcription-coupled NER (TC-NER) | R-HSA-73937 | 7.49 |
| Formation of incision complex in GG-NER | R-HSA-73935 | 8.59 |
| RNA Polymerase I Promoter Escape | R-HSA-73772 | 8.08 |
| RNA Polymerase I Chain Elongation | R-HSA-73777 | 7.18 |
| RNA Polymerase II Promoter Escape | R-HSA-73776 | 7.52 |
| RNA Polymerase II Transcription Pre-Initiation And Promoter Opening | R-HSA-73779 | 7.52 |
| RNA Polymerase I Promoter Clearance | R-HSA-73854 | 6.75 |
| Disease | R-HSA-1643685 | 3.33 |
| RNA Polymerase II Pre-transcription Events | R-HSA-674695 | 7.01 |
| Transcription of the HIV genome | R-HSA-167172 | 6.96 |
| Negative epigenetic regulation of rRNA expression | R-HSA-5250941 | 6.75 |
| RNA Polymerase II Transcription Initiation And Promoter Clearance | R-HSA-76042 | 7.52 |
| Gene Expression | R-HSA-74160 | 2.72 |
| Formation of the HIV-1 Early Elongation Complex | R-HSA-167158 | 7.94 |
| HIV Infection | R-HSA-162906 | 5.22 |
| Late Phase of HIV Life Cycle | R-HSA-162599 | 6.02 |
| Nucleotide Excision Repair | R-HSA-73885 | 7.34 |
| RNA Polymerase II Transcription | R-HSA-73857 | 6.25 |
| Infectious disease | R-HSA-5663205 | 4.47 |
| Epigenetic regulation of gene expression | R-HSA-212165 | 6.46 |
| mRNA Capping | R-HSA-72086 | 8.12 |
| RNA Polymerase I, RNA Polymerase III, and Mitochondrial Transcription | R-HSA-504046 | 6.16 |
| RNA Polymerase II Transcription Initiation | R-HSA-75953 | 7.52 |
| Dual incision reaction in GG-NER | R-HSA-73941 | 8.59 |
| HIV Transcription Elongation | R-HSA-167169 | 7.59 |
| RNA Polymerase I Transcription | R-HSA-73864 | 6.72 |
| HIV Transcription Initiation | R-HSA-167161 | 7.52 |
| RNA Pol II CTD phosphorylation and interaction with CE | R-HSA-167160 | 8.23 |
| RNA Polymerase I Transcription Termination | R-HSA-73863 | 8.03 |
| RNA Polymerase II HIV Promoter Escape | R-HSA-167162 | 7.52 |
| Formation of RNA Pol II elongation complex | R-HSA-112382 | 7.56 |
| Formation of HIV elongation complex in the absence of HIV Tat | R-HSA-167152 | 7.56 |
| Formation of HIV-1 elongation complex containing HIV-1 Tat | R-HSA-167200 | 7.59 |
| RNA Pol II CTD phosphorylation and interaction with CE | R-HSA-77075 | 8.23 |
| Formation of the Early Elongation Complex | R-HSA-113418 | 7.94 |
| NoRC negatively regulates rRNA expression | R-HSA-427413 | 6.81 |
| DNA Repair | R-HSA-73894 | 5.8 |
| RNA Polymerase I Transcription Initiation | R-HSA-73762 | 7.43 |
| Tat-mediated elongation of the HIV-1 transcript | R-HSA-167246 | 7.59 |
| HIV Life Cycle | R-HSA-162587 | 5.89 |
| RNA Polymerase II Transcription Elongation | R-HSA-75955 | 7.56 |