Gene table of ISPD : isoprenoid synthase domain containing

Gene-disease associations table

Disease ID	Disease name	Source of annotation with ISPD	OMIM link	Number of associated genes	genes
PS253600	MUSCULAR DYSTROPHY, LIMB-GIRDLE, AUTOSOMAL RECESSIVE	ClinVar, OMIM, HUMSAVAR	link to OMIM	24	SGCA, TCAP, SGCB, ISPD, BVES, POMK, POMT2, TRAPPC11, SGCD, TTN, FKTN, POMT1, TRIM32, LIMS2, ANO5, CAPN3, DYSF, FKRP, POMGNT1, SGCG, DAG1, GMPPB, DES, PLEC
PS236670	MUSCULAR DYSTROPHY-DYSTROGLYCANOPATHY, TYPE A	ClinVar, OMIM, HUMSAVAR	link to OMIM	14	GMPPB, POMT2, LARGE1, FKRP, FKTN, TMEM5, B4GAT1, POMT1, B3GALNT2, POMGNT2, ISPD, DAG1, POMGNT1, POMK

Download the gene annotation in CSV format

Annotation of the gene ISPD

Associated genes in ENSEMBL

ENSG00000214960

Associated proteins - SwissProt Accession ID

A4D126

Associated PDB IDs

4cvh

Cytogenetic Band

7p21.2

Tandem repeats annotation

Transcription regulation as annotated in TRRUST

Associated KEGG pathways

Associated REACTOME pathways

Associated GO terms for Molecular function

GO term	GO ID	GO IC
nucleotidyltransferase activity	GO:0016779	4.81
cytidylyltransferase activity	GO:0070567	7.54
transferase activity, transferring phosphorus-containing groups	GO:0016772	2.77
catalytic activity	GO:0003824	1.05
transferase activity	GO:0016740	1.95
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	GO:0050518	9.74

--> -->

<type 'exceptions.KeyError'>

Python 2.7.9: /usr/bin/python
Mon Dec 2 14:19:07 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

/usr/lib/cgi-bin/gene_disease_db/gene.py in ()

475 kegg_ann(gene)

476 react_ann(gene)

=> 477 GOBPs,GOCCs=GO_ann(gene)

478 if make_file==True:

479 outcsv.close()

GOBPs undefined, GOCCs undefined, GO_ann = <function GO_ann>, gene = 'ISPD'

/usr/lib/cgi-bin/gene_disease_db/gene.py in GO_ann(gene='ISPD')

345 print '<summary id="missing"> Associated GO terms for '+root2root_names[root]+' </summary>'

346 print '</details>'

=> 347 return root2GO["biological_process"],root2GO["cellular_component"]

348

349 def kegg_ann(gene):

root2GO = {'biological_process': set(['GO:0005975', 'GO:0006464', 'GO:0006486', 'GO:0006493', 'GO:0006629', 'GO:0006720', ...]), 'molecular_function': set(['GO:0003824', 'GO:0016740', 'GO:0016772', 'GO:0016779', 'GO:0050518', 'GO:0070567'])}

<type 'exceptions.KeyError'>: 'cellular_component'
args = ('cellular_component',)
message = 'cellular_component'