Gene table of PDLIM4 : PDZ and LIM domain 4

Gene-disease associations table

Disease IDDisease nameSource of annotation with PDLIM4OMIM linkNumber of associated genesgenes
166710OSTEOPOROSISOMIM link to OMIM 7WNT1, CALCR, PDLIM4, COL1A1, COL1A2, VDR, LRP5
613418BONE MINERAL DENSITY QUANTITATIVE TRAIT LOCUS 15ClinVar link to OMIM 3PDLIM4, MIR2861, CALCR

Download the gene annotation in CSV format

Annotation of the gene PDLIM4

Associated genes in ENSEMBL
Associated proteins - SwissProt Accession ID
Associated PDB IDs
Cytogenetic Band
Tandem repeats annotation
Transcription regulation as annotated in TRRUST
Associated KEGG pathways
Associated REACTOME pathways
Associated GO terms for Molecular function
GO termGO IDGO IC
cation bindingGO:00431691.4
transition metal ion bindingGO:00469142.48
ion bindingGO:00431671.36
bindingGO:00054880.18
protein bindingGO:00055150.46
metal ion bindingGO:00468721.41
zinc ion bindingGO:00082702.66
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<type 'exceptions.KeyError'>
Python 2.7.9: /usr/bin/python
Fri Mar 29 15:06:09 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /usr/lib/cgi-bin/gene_disease_db/gene.py in ()
    475 kegg_ann(gene)
    476 react_ann(gene)
=>  477 GOBPs,GOCCs=GO_ann(gene)
    478 if make_file==True:
    479         outcsv.close()
GOBPs undefined, GOCCs undefined, GO_ann = <function GO_ann>, gene = 'PDLIM4'
 /usr/lib/cgi-bin/gene_disease_db/gene.py in GO_ann(gene='PDLIM4')
    345           print '<summary id="missing"> Associated GO terms for '+root2root_names[root]+' </summary>'
    346     print '</details>'
=>  347     return root2GO["biological_process"],root2GO["cellular_component"]
    348 
    349 def kegg_ann(gene):
root2GO = {'molecular_function': set(['GO:0005488', 'GO:0005515', 'GO:0008270', 'GO:0043167', 'GO:0043169', 'GO:0046872', ...])}

<type 'exceptions.KeyError'>: 'biological_process'
      args = ('biological_process',)
      message = 'biological_process'