GO term | GO ID | GO IC |
---|---|---|
cation binding | GO:0043169 | 1.4 |
transition metal ion binding | GO:0046914 | 2.48 |
ion binding | GO:0043167 | 1.36 |
binding | GO:0005488 | 0.18 |
protein binding | GO:0005515 | 0.46 |
metal ion binding | GO:0046872 | 1.41 |
zinc ion binding | GO:0008270 | 2.66 |
<type 'exceptions.KeyError'> | Python 2.7.9: /usr/bin/python Wed Dec 4 03:57:28 2024 |
A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.
/usr/lib/cgi-bin/gene_disease_db/gene.py in |
475 kegg_ann(gene) |
476 react_ann(gene) |
=> 477 GOBPs,GOCCs=GO_ann(gene) |
478 if make_file==True: |
479 outcsv.close() |
GOBPs undefined, GOCCs undefined, GO_ann = <function GO_ann>, gene = 'RNF32' |
/usr/lib/cgi-bin/gene_disease_db/gene.py in GO_ann(gene='RNF32') |
345 print '<summary id="missing"> Associated GO terms for '+root2root_names[root]+' </summary>' |
346 print '</details>' |
=> 347 return root2GO["biological_process"],root2GO["cellular_component"] |
348 |
349 def kegg_ann(gene): |
root2GO = {'cellular_component': set(['GO:0005737', 'GO:0005768', 'GO:0005773', 'GO:0016234', 'GO:0016235', 'GO:0043226', ...]), 'molecular_function': set(['GO:0005488', 'GO:0005515', 'GO:0008270', 'GO:0043167', 'GO:0043169', 'GO:0046872', ...])} |
<type 'exceptions.KeyError'>: 'biological_process'
args =
('biological_process',)
message =
'biological_process'