Gene table of SSR4 : signal sequence receptor subunit 4

Gene-disease associations table

Disease ID	Disease name	Source of annotation with SSR4	OMIM link	Number of associated genes	genes
PS212065	CONGENITAL DISORDERS OF GLYCOSYLATION, TYPE I	OMIM	link to OMIM	25	ALG2, ALG1, ALG13, ALG3, CAD, STT3A, SRD5A3, ALG12, ALG8, DPAGT1, DDOST, ALG6, MPI, PMM2, STT3B, DOLK, MPDU1, RFT1, PGM1, ALG9, DPM1, DPM3, ALG11, DPM2, SSR4

Associated genes in ENSEMBL

Associated proteins - SwissProt Accession ID

Associated PDB IDs

Cytogenetic Band

Tandem repeats annotation

Transcription regulation as annotated in TRRUST

Associated KEGG pathways

KEGG pathway	KEGG ID	KEGG IC
Protein processing in endoplasmic reticulum	hsa04141	5.35

Associated REACTOME pathways

REACTOME pathway	REACTOME ID	REACTOME IC
Gene Expression	R-HSA-74160	2.72
SRP-dependent cotranslational protein targeting to membrane	R-HSA-1799339	6.24
Metabolism of proteins	R-HSA-392499	3.41
Translation	R-HSA-72766	5.8

Associated GO terms for Molecular function

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<type 'exceptions.KeyError'>

Python 2.7.9: /usr/bin/python
Mon Dec 2 15:00:06 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

475 kegg_ann(gene)

476 react_ann(gene)

=> 477 GOBPs,GOCCs=GO_ann(gene)

478 if make_file==True:

479 outcsv.close()

GOBPs undefined, GOCCs undefined, GO_ann = <function GO_ann>, gene = 'SSR4'

345 print '<summary id="missing"> Associated GO terms for '+root2root_names[root]+' </summary>'

346 print '</details>'

=> 347 return root2GO["biological_process"],root2GO["cellular_component"]

348

349 def kegg_ann(gene):

root2GO = {'cellular_component': set(['GO:0005783', 'GO:0005784', 'GO:0005789', 'GO:0016020', 'GO:0016021', 'GO:0031224', ...])}

<type 'exceptions.KeyError'>: 'biological_process'
args = ('biological_process',)
message = 'biological_process'