| Disease ID | Disease name | Source of annotation with TET2 | OMIM link | Number of associated genes | genes |
|---|---|---|---|---|---|
| 614286 | MYELODYSPLASTIC SYNDROME | OMIM | link to OMIM | 5 | SETBP1, SF3B1, GATA2, TET2, ASXL1 |
Download the gene annotation in CSV format
| REACTOME pathway | REACTOME ID | REACTOME IC |
|---|---|---|
| TET1,2,3 and TDG demethylate DNA | R-HSA-5221030 | 10.98 |
| Epigenetic regulation of gene expression | R-HSA-212165 | 6.46 |
| Gene Expression | R-HSA-74160 | 2.72 |
| GO term | GO ID | GO IC |
|---|---|---|
| cation binding | GO:0043169 | 1.4 |
| protein binding | GO:0005515 | 0.46 |
| metal ion binding | GO:0046872 | 1.41 |
| dioxygenase activity | GO:0051213 | 5.25 |
| transition metal ion binding | GO:0046914 | 2.48 |
| oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors | GO:0016706 | 5.95 |
| organic cyclic compound binding | GO:0097159 | 1.05 |
| oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | GO:0016705 | 4.65 |
| ion binding | GO:0043167 | 1.36 |
| ferrous iron binding | GO:0008198 | 6.65 |
| catalytic activity | GO:0003824 | 1.05 |
| binding | GO:0005488 | 0.18 |
| nucleic acid binding | GO:0003676 | 1.44 |
| DNA binding | GO:0003677 | 1.92 |
| iron ion binding | GO:0005506 | 4.65 |
| oxidoreductase activity | GO:0016491 | 3.12 |
| methylcytosine dioxygenase activity | GO:0070579 | 8.35 |
| heterocyclic compound binding | GO:1901363 | 1.06 |
| zinc ion binding | GO:0008270 | 2.66 |
| <type 'exceptions.KeyError'> | Python 2.7.9: /usr/bin/python Sun Dec 3 23:09:00 2023 |
A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.
| /usr/lib/cgi-bin/gene_disease_db/gene.py in |
| 475 kegg_ann(gene) |
| 476 react_ann(gene) |
| => 477 GOBPs,GOCCs=GO_ann(gene) |
| 478 if make_file==True: |
| 479 outcsv.close() |
| GOBPs undefined, GOCCs undefined, GO_ann = <function GO_ann>, gene = 'TET2' |
| /usr/lib/cgi-bin/gene_disease_db/gene.py in GO_ann(gene='TET2') |
| 345 print '<summary id="missing"> Associated GO terms for '+root2root_names[root]+' </summary>' |
| 346 print '</details>' |
| => 347 return root2GO["biological_process"],root2GO["cellular_component"] |
| 348 |
| 349 def kegg_ann(gene): |
| root2GO = {'biological_process': set(['GO:0001822', 'GO:0002244', 'GO:0002318', 'GO:0005975', 'GO:0006139', 'GO:0006206', ...]), 'molecular_function': set(['GO:0003676', 'GO:0003677', 'GO:0003824', 'GO:0005488', 'GO:0005506', 'GO:0005515', ...])} |
<type 'exceptions.KeyError'>: 'cellular_component'
args =
('cellular_component',)
message =
'cellular_component'