Disease ID | Disease name | Source of annotation with TGDS | OMIM link | Number of associated genes | genes |
---|---|---|---|---|---|
616145 | CATEL-MANZKE SYNDROME | ClinVar, OMIM, HUMSAVAR | link to OMIM | 1 | TGDS |
Download the gene annotation in CSV format
KEGG pathway | KEGG ID | KEGG IC |
---|---|---|
Metabolic pathways | hsa01100 | 2.49 |
GO term | GO ID | GO IC |
---|---|---|
dTDP-glucose 4,6-dehydratase activity | GO:0008460 | 9.74 |
carbon-oxygen lyase activity | GO:0016835 | 5.46 |
hydro-lyase activity | GO:0016836 | 5.81 |
lyase activity | GO:0016829 | 4.53 |
catalytic activity | GO:0003824 | 1.05 |
<type 'exceptions.KeyError'> | Python 2.7.9: /usr/bin/python Thu Mar 28 16:53:00 2024 |
A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.
/usr/lib/cgi-bin/gene_disease_db/gene.py in |
475 kegg_ann(gene) |
476 react_ann(gene) |
=> 477 GOBPs,GOCCs=GO_ann(gene) |
478 if make_file==True: |
479 outcsv.close() |
GOBPs undefined, GOCCs undefined, GO_ann = <function GO_ann>, gene = 'TGDS' |
/usr/lib/cgi-bin/gene_disease_db/gene.py in GO_ann(gene='TGDS') |
345 print '<summary id="missing"> Associated GO terms for '+root2root_names[root]+' </summary>' |
346 print '</details>' |
=> 347 return root2GO["biological_process"],root2GO["cellular_component"] |
348 |
349 def kegg_ann(gene): |
root2GO = {'biological_process': set(['GO:0006139', 'GO:0006725', 'GO:0006807', 'GO:0008152', 'GO:0009225', 'GO:0009987', ...]), 'molecular_function': set(['GO:0003824', 'GO:0008460', 'GO:0016829', 'GO:0016835', 'GO:0016836'])} |
<type 'exceptions.KeyError'>: 'cellular_component'
args =
('cellular_component',)
message =
'cellular_component'