Gene table of THSD1 : thrombospondin type 1 domain containing 1

Gene-disease associations table

Disease ID	Disease name	Source of annotation with THSD1	OMIM link	Number of associated genes	genes
236750	HYDROPS FETALIS, NONIMMUNE	ClinVar	link to OMIM	11	MYOM1, NEU1, FZD6, DNAH14, NEB, THSD1, UBN1, CHRNA1, GALNT14, PIGC, GUSB

Associated genes in ENSEMBL

Associated proteins - SwissProt Accession ID

Associated PDB IDs

Cytogenetic Band

Tandem repeats annotation

Transcription regulation as annotated in TRRUST

Associated KEGG pathways

Associated REACTOME pathways

REACTOME pathway	REACTOME ID	REACTOME IC
Post-translational protein modification	R-HSA-597592	4.54
O-glycosylation of TSR domain-containing proteins	R-HSA-5173214	7.7
Metabolism of proteins	R-HSA-392499	3.41
O-linked glycosylation	R-HSA-5173105	6.3

Associated GO terms for Molecular function

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<type 'exceptions.KeyError'>

Python 2.7.9: /usr/bin/python
Sat Apr 20 02:12:06 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

475 kegg_ann(gene)

476 react_ann(gene)

=> 477 GOBPs,GOCCs=GO_ann(gene)

478 if make_file==True:

479 outcsv.close()

GOBPs undefined, GOCCs undefined, GO_ann = <function GO_ann>, gene = 'THSD1'

345 print '<summary id="missing"> Associated GO terms for '+root2root_names[root]+' </summary>'

346 print '</details>'

=> 347 return root2GO["biological_process"],root2GO["cellular_component"]

348

349 def kegg_ann(gene):

root2GO = {'cellular_component': set(['GO:0005576', 'GO:0005737', 'GO:0016020', 'GO:0016021', 'GO:0031224', 'GO:0044424', ...])}

<type 'exceptions.KeyError'>: 'biological_process'
args = ('biological_process',)
message = 'biological_process'