| Disease ID | Disease name | Source of annotation with RD3 | OMIM link | Number of associated genes | genes |
|---|---|---|---|---|---|
| PS204000 | LEBER CONGENITAL AMAUROSIS | ClinVar, OMIM | link to OMIM | 19 | TULP1, PRPH2, LRAT, SPATA7, CEP290, RDH12, RPE65, CRX, GDF6, GUCY2D, ROM1, IMPDH1, KCNJ13, RD3, NMNAT1, LCA5, RPGRIP1, CRB1, AIPL1 |
Download the gene annotation in CSV format
| GO term | GO ID | GO IC |
|---|---|---|
| binding | GO:0005488 | 0.18 |
| protein binding | GO:0005515 | 0.46 |
| <type 'exceptions.KeyError'> | Python 2.7.9: /usr/bin/python Tue Dec 3 11:46:23 2024 |
A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.
| /usr/lib/cgi-bin/gene_disease_db/gene.py in |
| 475 kegg_ann(gene) |
| 476 react_ann(gene) |
| => 477 GOBPs,GOCCs=GO_ann(gene) |
| 478 if make_file==True: |
| 479 outcsv.close() |
| GOBPs undefined, GOCCs undefined, GO_ann = <function GO_ann>, gene = 'RD3' |
| /usr/lib/cgi-bin/gene_disease_db/gene.py in GO_ann(gene='RD3') |
| 345 print '<summary id="missing"> Associated GO terms for '+root2root_names[root]+' </summary>' |
| 346 print '</details>' |
| => 347 return root2GO["biological_process"],root2GO["cellular_component"] |
| 348 |
| 349 def kegg_ann(gene): |
| root2GO = {'biological_process': set(['GO:0003008', 'GO:0007600', 'GO:0007601', 'GO:0032501', 'GO:0032502', 'GO:0048856', ...]), 'molecular_function': set(['GO:0005488', 'GO:0005515'])} |
<type 'exceptions.KeyError'>: 'cellular_component'
args =
('cellular_component',)
message =
'cellular_component'