Gene table of RD3 : retinal degeneration 3

Gene-disease associations table

Disease IDDisease nameSource of annotation with RD3OMIM linkNumber of associated genesgenes
PS204000LEBER CONGENITAL AMAUROSISClinVar, OMIM link to OMIM 19TULP1, PRPH2, LRAT, SPATA7, CEP290, RDH12, RPE65, CRX, GDF6, GUCY2D, ROM1, IMPDH1, KCNJ13, RD3, NMNAT1, LCA5, RPGRIP1, CRB1, AIPL1

Download the gene annotation in CSV format

Annotation of the gene RD3

Associated genes in ENSEMBL
Associated proteins - SwissProt Accession ID
Associated PDB IDs
Cytogenetic Band
Tandem repeats annotation
Transcription regulation as annotated in TRRUST
Associated KEGG pathways
Associated REACTOME pathways
Associated GO terms for Molecular function
GO termGO IDGO IC
bindingGO:00054880.18
protein bindingGO:00055150.46
--> -->
 
 
<type 'exceptions.KeyError'>
Python 2.7.9: /usr/bin/python
Sun Jun 23 02:22:21 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /usr/lib/cgi-bin/gene_disease_db/gene.py in ()
    475 kegg_ann(gene)
    476 react_ann(gene)
=>  477 GOBPs,GOCCs=GO_ann(gene)
    478 if make_file==True:
    479         outcsv.close()
GOBPs undefined, GOCCs undefined, GO_ann = <function GO_ann>, gene = 'RD3'
 /usr/lib/cgi-bin/gene_disease_db/gene.py in GO_ann(gene='RD3')
    345           print '<summary id="missing"> Associated GO terms for '+root2root_names[root]+' </summary>'
    346     print '</details>'
=>  347     return root2GO["biological_process"],root2GO["cellular_component"]
    348 
    349 def kegg_ann(gene):
root2GO = {'biological_process': set(['GO:0003008', 'GO:0007600', 'GO:0007601', 'GO:0032501', 'GO:0032502', 'GO:0048856', ...]), 'molecular_function': set(['GO:0005488', 'GO:0005515'])}

<type 'exceptions.KeyError'>: 'cellular_component'
      args = ('cellular_component',)
      message = 'cellular_component'