Gene table of SGO1 : shugoshin 1

Gene-disease associations table

Disease ID	Disease name	Source of annotation with SGO1	OMIM link	Number of associated genes	genes
616201	CHRONIC ATRIAL AND INTESTINAL DYSRHYTHMIA	ClinVar, OMIM, HUMSAVAR	link to OMIM	1	SGO1

Associated genes in ENSEMBL

Associated proteins - SwissProt Accession ID

Associated PDB IDs

Cytogenetic Band

Tandem repeats annotation

Transcription regulation as annotated in TRRUST

Associated KEGG pathways

KEGG pathway	KEGG ID	KEGG IC
Oocyte meiosis	hsa04114	5.91

Associated REACTOME pathways

REACTOME pathway	REACTOME ID	REACTOME IC
RHO GTPase Effectors	R-HSA-195258	4.94
RHO GTPases Activate Formins	R-HSA-5663220	6.01
Resolution of Sister Chromatid Cohesion	R-HSA-2500257	6.18
Mitotic Metaphase and Anaphase	R-HSA-2555396	5.45
Separation of Sister Chromatids	R-HSA-2467813	5.55
Signaling by Rho GTPases	R-HSA-194315	4.43
M Phase	R-HSA-68886	4.87
Cell Cycle, Mitotic	R-HSA-69278	4.16
Mitotic Anaphase	R-HSA-68882	5.46
Cell Cycle	R-HSA-1640170	3.89
Mitotic Prometaphase	R-HSA-68877	6.08
Signal Transduction	R-HSA-162582	1.78

Associated GO terms for Molecular function

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<type 'exceptions.KeyError'>

Python 2.7.9: /usr/bin/python
Fri May 3 11:57:11 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

475 kegg_ann(gene)

476 react_ann(gene)

=> 477 GOBPs,GOCCs=GO_ann(gene)

478 if make_file==True:

479 outcsv.close()

GOBPs undefined, GOCCs undefined, GO_ann = <function GO_ann>, gene = 'SGO1'

345 print '<summary id="missing"> Associated GO terms for '+root2root_names[root]+' </summary>'

346 print '</details>'

=> 347 return root2GO["biological_process"],root2GO["cellular_component"]

348

349 def kegg_ann(gene):

root2GO = {}

<type 'exceptions.KeyError'>: 'biological_process'
args = ('biological_process',)
message = 'biological_process'