Disease table of SARCOMA, SYNOVIAL OMIM ID: 300813

Gene-disease associations table

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Gene	Associated with SARCOMA, SYNOVIAL in	Link to HGNC	Cytogenetic band	Number of associated diseases	Associated diseases
SSX1	OMIM	HGNC link	Xp11.23	1	300813
SSX2	OMIM	HGNC link	Xp11.22	1	300813

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Download the disease annotation in CSV format

Relations among genes:

Tandem repeat annotations from DGD

Cytogenetic band analysis

By band

Shared band	Number of genes associated with the disease	Genes associated with the disease
Xp11	2	SSX2, SSX1

By region

Shared region	Number of genes associated with the disease	Genes associated with the disease
Xp1	2	SSX2, SSX1

By arm

Shared arm	Number of genes associated with the disease	Genes associated with the disease
Xp	2	SSX2, SSX1

By chromosome

Shared chromosome	Number of genes associated with the disease	Genes associated with the disease
X	2	SSX2, SSX1

Transcription Factors (TF) annotation from TRRUST

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TF	associated to this disease	# regulated genes	Regulated genes	# regulated genes associated with this disease	Regulated genes associated with this disease
SSX2	YES	1	MMP2	0

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Interactions from BIOGRID - physical

Gene1	Gene2	Direct Interaction	Number of shared interactors	Shared genes in interaction
SSX2	SSX1	No	1	MAGEC2

Direct interactions graph
Interactions graph (direct and indirect interactions, when direct are not available)

Interactions from BIOGRID - genetic

Interactions from STRING

Interactions from CORUM

Interactions from CENSUS

Interactions from PDB

Interactions from manually curated literature

KEGG pathways annotation: shared terms / NET-GE enrichment

Shared terms

KEGG term	KEGG term ID	IC	Number of genes with the same term	Genes
Transcriptional misregulation in cancer	hsa05202	5.21	2	SSX1, SSX2

NET-GE enrichment

Term	New enriched term	IC	P value	Genes
Transcriptional misregulation in cancer (hsa05202)	-	5.21	0.003	SSX1, SSX2

REACTOME pathways annotation: shared terms / NET-GE enrichment (no shared terms)

GO - molecular function annotation: shared terms (no NET-GE enrichment)

Shared terms

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GO	IC	Number of genes with the same GO	Genes
transcription corepressor activity (GO:0003714)	4.33	2	SSX1, SSX2
transcription cofactor activity (GO:0003712)	3.44	2	SSX1, SSX2
transcription factor activity, transcription factor binding (GO:0000989)	3.36	2	SSX1, SSX2
transcription factor activity, protein binding (GO:0000988)	3.35	2	SSX1, SSX2
nucleic acid binding (GO:0003676)	1.44	2	SSX1, SSX2
heterocyclic compound binding (GO:1901363)	1.06	2	SSX1, SSX2
organic cyclic compound binding (GO:0097159)	1.05	2	SSX1, SSX2
protein binding (GO:0005515)	0.46	2	SSX1, SSX2
binding (GO:0005488)	0.18	2	SSX1, SSX2

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GO - biological process annotation: shared terms (no NET-GE enrichment)

Shared terms

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GO	IC	Number of genes with the same GO	Genes
negative regulation of nucleic acid-templated transcription (GO:1903507)	2.71	2	SSX1, SSX2
negative regulation of RNA biosynthetic process (GO:1902679)	2.7	2	SSX1, SSX2
negative regulation of RNA metabolic process (GO:0051253)	2.66	2	SSX1, SSX2
negative regulation of nucleobase-containing compound metabolic process (GO:0045934)	2.55	2	SSX1, SSX2
negative regulation of macromolecule biosynthetic process (GO:0010558)	2.53	2	SSX1, SSX2
negative regulation of cellular biosynthetic process (GO:0031327)	2.49	2	SSX1, SSX2
negative regulation of biosynthetic process (GO:0009890)	2.47	2	SSX1, SSX2
negative regulation of nitrogen compound metabolic process (GO:0051172)	2.47	2	SSX1, SSX2
negative regulation of cellular metabolic process (GO:0031324)	2.01	2	SSX1, SSX2
negative regulation of macromolecule metabolic process (GO:0010605)	2.01	2	SSX1, SSX2

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GO - cellular component annotation: shared terms (no NET-GE enrichment)

Shared terms

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GO	IC	Number of genes with the same GO	Genes
intracellular (GO:0005622)	2.37	2	SSX1, SSX2
nucleus (GO:0005634)	1.07	2	SSX1, SSX2
intracellular membrane-bounded organelle (GO:0043231)	0.6	2	SSX1, SSX2
intracellular organelle (GO:0043229)	0.51	2	SSX1, SSX2
membrane-bounded organelle (GO:0043227)	0.47	2	SSX1, SSX2
organelle (GO:0043226)	0.4	2	SSX1, SSX2
intracellular part (GO:0044424)	0.28	2	SSX1, SSX2
cell part (GO:0044464)	0.11	2	SSX1, SSX2

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