Gene table of WHRN : whirlin

Gene-disease associations table

Disease IDDisease nameSource of annotation with WHRNOMIM linkNumber of associated genesgenes
PS276900USHER SYNDROMEClinVar, OMIM link to OMIM 12WHRN, PCDH15, USH1G, PDZD7, CLRN1, MYO7A, USH1C, ADGRV1, CDH23, CIB2, USH2A, HARS
PS220290DEAFNESS, AUTOSOMAL RECESSIVEClinVar, OMIM link to OMIM 60CLIC5, KARS, OTOGL, CABP2, HGF, DFNB59, GIPC3, EPS8, MYO3A, CDH23, OTOF, ELMOD3, ESRRB, RDX, GJB2, GJB3, ESPN, ADCY1, CIB2, STRC, TMIE, S1PR2, FAM65B, TSPEAR, TBC1D24, SLC26A4, OTOG, COL11A2, MARVELD2, PNPT1, MYO15A, WHRN, CLDN14, MYO7A, GJB6, MET, TPRN, DCDC2, LRTOMT, TMC1, MYO6, ILDR1, MSRB3, SERPINB6, SLC26A5, ATP2B2, LHFPL5, SYNE4, GRXCR2, FOXI1, GRXCR1, LOXHD1, TECTA, PCDH15, TRIOBP, USH1C, KCNJ10, PTPRQ, TMPRSS3, OTOA

Download the gene annotation in CSV format

Annotation of the gene WHRN

Associated genes in ENSEMBL
Associated proteins - SwissProt Accession ID
Associated PDB IDs
Cytogenetic Band
Tandem repeats annotation
Transcription regulation as annotated in TRRUST
Associated KEGG pathways
Associated REACTOME pathways
Associated GO terms for Molecular function
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<type 'exceptions.KeyError'>
Python 2.7.9: /usr/bin/python
Sun May 26 08:15:16 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /usr/lib/cgi-bin/gene_disease_db/gene.py in ()
    475 kegg_ann(gene)
    476 react_ann(gene)
=>  477 GOBPs,GOCCs=GO_ann(gene)
    478 if make_file==True:
    479         outcsv.close()
GOBPs undefined, GOCCs undefined, GO_ann = <function GO_ann>, gene = 'WHRN'
 /usr/lib/cgi-bin/gene_disease_db/gene.py in GO_ann(gene='WHRN')
    345           print '<summary id="missing"> Associated GO terms for '+root2root_names[root]+' </summary>'
    346     print '</details>'
=>  347     return root2GO["biological_process"],root2GO["cellular_component"]
    348 
    349 def kegg_ann(gene):
root2GO = {}

<type 'exceptions.KeyError'>: 'biological_process'
      args = ('biological_process',)
      message = 'biological_process'