Gene table of SETBP1 : SET binding protein 1

Gene-disease associations table

Disease IDDisease nameSource of annotation with SETBP1OMIM linkNumber of associated genesgenes
601626LEUKEMIA, ACUTE MYELOIDHUMSAVAR link to OMIM 23FLT3, RUNX1, WHSC1L1, KIT, MLF1, CHIC2, CEBPA, LPP, SH3GL1, PICALM, NPM1, CBFB, ETV6, MLLT10, TERT, NUP214, JAK2, TGM6, GATA2, SETBP1, DDX41, NSD1, KRAS
608232LEUKEMIA, CHRONIC MYELOIDHUMSAVAR link to OMIM 2BCR, SETBP1
269150SCHINZEL-GIEDION MIDFACE RETRACTION SYNDROMEClinVar, OMIM, HUMSAVAR link to OMIM 1SETBP1
PS156200MENTAL RETARDATION, AUTOSOMAL DOMINANTClinVar, OMIM link to OMIM 44EHMT1, MEF2C, AHDC1, SOX11, CDH15, KIRREL3, EEF1A2, KAT6A, ZMYND11, ARID1A, KMT2C, PPP2R5D, DYNC1H1, GRIN1, CTCF, SETD5, NR1I3, PACS1, DPP6, DEAF1, KIF1A, SYNGAP1, PURA, POGZ, EPB41L1, PPP2R1A, AUTS2, CTNNB1, ARID1B, ZBTB18, CACNG2, MBD5, SMARCB1, KANSL1, SMARCE1, COL4A3BP, MYT1L, ADNP, SMARCA4, GATAD2B, SETBP1, GRIN2B, CHAMP1, DYRK1A
614286MYELODYSPLASTIC SYNDROMEHUMSAVAR link to OMIM 5SETBP1, SF3B1, GATA2, TET2, ASXL1
607785JUVENILE MYELOMONOCYTIC LEUKEMIAHUMSAVAR link to OMIM 8MLLT11, NF1, ARHGAP26, KRAS, SETBP1, PTPN11, CBL, NRAS

Download the gene annotation in CSV format

Annotation of the gene SETBP1

Associated genes in ENSEMBL
Associated proteins - SwissProt Accession ID
Associated PDB IDs
Cytogenetic Band
Tandem repeats annotation
Transcription regulation as annotated in TRRUST

It is a TF of the genes:

Associated KEGG pathways
Associated REACTOME pathways
Associated GO terms for Molecular function
GO termGO IDGO IC
protein bindingGO:00055150.46
organic cyclic compound bindingGO:00971591.05
bindingGO:00054880.18
nucleic acid bindingGO:00036761.44
DNA bindingGO:00036771.92
heterocyclic compound bindingGO:19013631.06
--> -->
 
 
<type 'exceptions.KeyError'>
Python 2.7.9: /usr/bin/python
Sun May 26 08:06:39 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /usr/lib/cgi-bin/gene_disease_db/gene.py in ()
    475 kegg_ann(gene)
    476 react_ann(gene)
=>  477 GOBPs,GOCCs=GO_ann(gene)
    478 if make_file==True:
    479         outcsv.close()
GOBPs undefined, GOCCs undefined, GO_ann = <function GO_ann>, gene = 'SETBP1'
 /usr/lib/cgi-bin/gene_disease_db/gene.py in GO_ann(gene='SETBP1')
    345           print '<summary id="missing"> Associated GO terms for '+root2root_names[root]+' </summary>'
    346     print '</details>'
=>  347     return root2GO["biological_process"],root2GO["cellular_component"]
    348 
    349 def kegg_ann(gene):
root2GO = {'cellular_component': set(['GO:0005634', 'GO:0043226', 'GO:0043227', 'GO:0043229', 'GO:0043231', 'GO:0044424', ...]), 'molecular_function': set(['GO:0003676', 'GO:0003677', 'GO:0005488', 'GO:0005515', 'GO:0097159', 'GO:1901363'])}

<type 'exceptions.KeyError'>: 'biological_process'
      args = ('biological_process',)
      message = 'biological_process'