CONSTITUTIONAL SYMPTOM, HP:0025142

This is a cluster of phenotypes following the categories of HPO


It has 151 associated diseases.

Show diseases

Associated diseases: ?FAMILIAL COLD AUTOINFLAMMATORY SYNDROME 4, CAMURATI-ENGELMANN DISEASE, PSEUDOACHONDROPLASIA, MYOTONIA CONGENITA, ATYPICAL, ACETAZOLAMIDE-RESPONSIVE, CZECH DYSPLASIA, MYOPATHY, CENTRONUCLEAR, 4, BARTH SYNDROME, DIARRHEA 6, MUSCULAR DYSTROPHY-DYSTROGLYCANOPATHY (LIMB-GIRDLE), TYPE C, 5, ANALBUMINEMIA, PORPHYRIA, ACUTE INTERMITTENT, NONERYTHROID VARIANT, PORPHYRIA, ACUTE INTERMITTENT, SPONDYLOEPIPHYSEAL DYSPLASIA TARDA, [ERYTHROCYTOSIS, FAMILIAL, 1], ERYTHROCYTOSIS, SOMATIC, CYCLIC VOMITING SYNDROME; CVS, GLUCOCORTICOID RESISTANCE, ANGIOEDEMA, HEREDITARY, TYPE III, PORPHYRIA, ACUTE HEPATIC, {LEAD POISONING, SUSCEPTIBILITY TO}, MUCOLIPIDOSIS III GAMMA, AUTOINFLAMMATION, ANTIBODY DEFICIENCY, AND IMMUNE DYSREGULATION SYNDROME, STING-ASSOCIATED VASCULOPATHY, INFANTILE-ONSET, TROPICAL CALCIFIC PANCREATITIS, {FIBROCALCULOUS PANCREATIC DIABETES, SUSCEPTIBILITY TO}, MATURITY-ONSET DIABETES OF THE YOUNG, TYPE VIII, CARASIL SYNDROME, POLYPOSIS, JUVENILE INTESTINAL, JUVENILE POLYPOSIS SYNDROME, INFANTILE FORM, MYOPATHY, TUBULAR AGGREGATE, 1, DENT DISEASE, MITOCHONDRIAL DNA DEPLETION SYNDROME 1 (MNGIE TYPE), RICKETS DUE TO DEFECT IN VITAMIN D 25-HYDROXYLATION, FAMILIAL MEDITERRANEAN FEVER, AR, MUSCULAR DYSTROPHY, LIMB-GIRDLE, TYPE 2L, AUTOIMMUNE LYMPHOPROLIFERATIVE SYNDROME, TYPE III, STORMORKEN SYNDROME, TRICHORHINOPHALANGEAL SYNDROME, TYPE I, MYOPATHY, VACUOLAR, WITH CASQ1 AGGREGATES, MITOCHONDRIAL DNA DEPLETION SYNDROME 12 (CARDIOMYOPATHIC TYPE), {NEUROBLASTOMA, SUSCEPTIBILITY TO, 1}, NEUROBLASTOMA, GLYCOGEN STORAGE DISEASE X, MEVALONIC ACIDURIA, CONGENITAL ANOMALIES OF KIDNEY AND URINARY TRACT 2, SITOSTEROLEMIA, PAROXYSMAL EXTREME PAIN DISORDER, VLCAD DEFICIENCY, SANDHOFF DISEASE, INFANTILE, JUVENILE, AND ADULT FORMS, INCLUSION BODY MYOPATHY WITH EARLY-ONSET PAGET DISEASE AND FRONTOTEMPORAL DEMENTIA 1, RIPPLING MUSCLE DISEASE, PERIODIC FEVER, FAMILIAL, RICKETS, VITAMIN D-RESISTANT, TYPE IIA, MUSCULAR DYSTROPHY-DYSTROGLYCANOPATHY (LIMB-GIRDLE), TYPE C, 3, AUTOINFLAMMATION, LIPODYSTROPHY, AND DERMATOSIS SYNDROME, PEUTZ-JEGHERS SYNDROME, MUSCLE GLYCOGENOSIS, HYPOPHOSPHATEMIC RICKETS, AUTOSOMAL DOMINANT, PROGRESSIVE EXTERNAL OPHTHALMOPLEGIA WITH MITOCHONDRIAL DNA DELETIONS, AUTOSOMAL DOMINANT 4, MULTICENTRIC CARPOTARSAL OSTEOLYSIS SYNDROME, LIPODYSTROPHY, CONGENITAL GENERALIZED, TYPE 4, MUCKLE-WELLS SYNDROME, EPIPHYSEAL DYSPLASIA, MULTIPLE, 4, FILS SYNDROME, FAMILIAL COLD-INDUCED INFLAMMATORY SYNDROME 1, C1R/C1S DEFICIENCY, COMBINED, ALKAPTONURIA, OVARIAN HYPERSTIMULATION SYNDROME, FRUCTOSE INTOLERANCE, ARRHYTHMOGENIC RIGHT VENTRICULAR DYSPLASIA 5, MYOGLOBINURIA, ACUTE RECURRENT, AUTOSOMAL RECESSIVE, CRANIOOSTEOARTHROPATHY, HYPERTROPHIC OSTEOARTHROPATHY, PRIMARY, AUTOSOMAL RECESSIVE 1, MITOCHONDRIAL DNA DEPLETION SYNDROME 4B (MNGIE TYPE), HYPEREOSINOPHILIC SYNDROME, IDIOPATHIC, RESISTANT TO IMATINIB, MYOTONIA CONGENITA, RECESSIVE, PROGRESSIVE EXTERNAL OPHTHALMOPLEGIA WITH MITOCHONDRIAL DNA DELETIONS, AUTOSOMAL DOMINANT 3, {PANCREATITIS, CHRONIC, SUSCEPTIBILITY TO}, {PANCREATITIS, CHRONIC, PROTECTION AGAINST}, {PANCREATITIS, IDIOPATHIC}, PANCREATITIS, HEREDITARY, MUSCULAR DYSTROPHY-DYSTROGLYCANOPATHY (CONGENITAL WITH OR WITHOUT MENTAL RETARDATION), TYPE B, 5, GAUCHER DISEASE, TYPE I, AUTOINFLAMMATION WITH INFANTILE ENTEROCOLITIS, EPIPHYSEAL DYSPLASIA, MULTIPLE, 5, MINICORE MYOPATHY WITH EXTERNAL OPHTHALMOPLEGIA, POLYARTERITIS NODOSA, CHILDHOOD-ONSET, VITAMIN D-DEPENDENT RICKETS, TYPE I, INTERLEUKIN 1 RECEPTOR ANTAGONIST DEFICIENCY, {PAGET DISEASE OF BONE 2, EARLY-ONSET}, TRIFUNCTIONAL PROTEIN DEFICIENCY, PROGRESSIVE EXTERNAL OPHTHALMOPLEGIA WITH MITOCHONDRIAL DNA DELETIONS, AUTOSOMAL RECESSIVE 2, SPONDYLOEPIPHYSEAL DYSPLASIA WITH CONGENITAL JOINT DISLOCATIONS, HYPER-IGD SYNDROME, FABRY DISEASE, FABRY DISEASE, CARDIAC VARIANT, FAMILIAL COLD AUTOINFLAMMATORY SYNDROME 2, BRITTLE CORNEA SYNDROME 2, HYPERTROPHIC OSTEOARTHROPATHY, PRIMARY, AUTOSOMAL RECESSIVE 2, LIANG DISTAL MYOPATHY, FRAGILE X TREMOR/ATAXIA SYNDROME, VASCULOPATHY, RETINAL, WITH CEREBRAL LEUKODYSTROPHY, CONGENITAL DISORDER OF GLYCOSYLATION, TYPE IT, POLYGLUCOSAN BODY MYOPATHY 1 WITH OR WITHOUT IMMUNODEFICIENCY, LIPODYSTROPHY, FAMILIAL PARTIAL, 2, MYOTONIC DYSTROPHY 2, ERYTHERMALGIA, PRIMARY, SMALL FIBER NEUROPATHY, ?PAROXYSMAL NOCTURNAL HEMOGLOBINURIA 2, MULTICENTRIC OSTEOLYSIS, NODULOSIS, AND ARTHROPATHY, BECKER MUSCULAR DYSTROPHY, SENGERS SYNDROME, {SPONDYLOARTHROPATHY, SUSCEPTIBILITY TO, 1}, MUSCULAR DYSTROPHY, LIMB-GIRDLE, TYPE 2H, NEUTRAL LIPID STORAGE DISEASE WITH MYOPATHY, EHLERS-DANLOS SYNDROME DUE TO TENASCIN X DEFICIENCY, 5-OXOPROLINASE DEFICIENCY, MUSCULAR DYSTROPHY, LIMB-GIRDLE, TYPE 2S, CHILBLAIN LUPUS, MALONYL-COA DECARBOXYLASE DEFICIENCY, COPROPORPHYRIA, HARDEROPORPHYRIA, LIPOPROTEIN LIPASE DEFICIENCY, GLYCOGEN STORAGE DISEASE XI, ANGIOEDEMA, HEREDITARY, TYPES I AND II, PARAMYOTONIA CONGENITA, SPONDYLOCOSTAL DYSOSTOSIS 5, POLYCYSTIC LIVER DISEASE, MYOPATHY DUE TO CPT II DEFICIENCY, EPITHELIAL RECURRENT EROSION DYSTROPHY, FAMILIAL MEDITERRANEAN FEVER, AD, {OSTEOARTHRITIS SUSCEPTIBILITY 3}, HYPOPHOSPHATEMIC RICKETS WITH HYPERCALCIURIA, MACHADO-JOSEPH DISEASE, ERYTHROCYTOSIS, FAMILIAL, 2, MYOPATHY, MYOFIBRILLAR, 3, ?EPIPHYSEAL DYSPLASIA, MULTIPLE, 6, SPASTIC PARAPLEGIA 4, AUTOSOMAL DOMINANT, OTOSPONDYLOMEGAEPIPHYSEAL DYSPLASIA, HYPEROXALURIA, PRIMARY, TYPE 1, SPONDYLOEPIPHYSEAL DYSPLASIA, STANESCU TYPE, MCARDLE DISEASE, GITELMAN SYNDROME, HYPOPHOSPHATEMIC RICKETS, X-LINKED DOMINANT, PAGET DISEASE OF BONE 3, CHARCOT-MARIE-TOOTH DISEASE, TYPE 2A2, DYSTONIA 16, HYPOPHOSPHATEMIC RICKETS, OSTEOLYSIS, FAMILIAL EXPANSILE, STICKLER SYNDROME, TYPE III, CAUDAL REGRESSION SYNDROME, HYPOMAGNESEMIA 3, RENAL, PORPHYRIA VARIEGATA, {PORPHYRIA VARIEGATA, SUSCEPTIBILITY TO}, HERMANSKY-PUDLAK SYNDROME 1, PROGRESSIVE EXTERNAL OPHTHALMOPLEGIA WITH MITOCHONDRIAL DNA DELETIONS, AUTOSOMAL DOMINANT 6, BERGER DISEASE, {CROHN DISEASE-ASSOCIATED GROWTH FAILURE}, {INFLAMMATORY BOWEL DISEASE 1}, MYOPATHY WITH POSTURAL MUSCLE ATROPHY, X-LINKED, ?GLYCOGEN STORAGE DISEASE XIII, EPISODIC PAIN SYNDROME, FAMILIAL, {AUTOIMMUNE INTERSTITIAL LUNG, JOINT, AND KIDNEY DISEASE}, MYOTONIA CONGENITA, DOMINANT, {CELIAC DISEASE, SUSCEPTIBILITY TO}, MUSCULAR DYSTROPHY, LIMB-GIRDLE, TYPE IC



It has 152 associated genes.

Show genes

Associated genes: LMNA, AGK, PHEX, TREX1, OPLAH, PRSS1, CPT2, PGAM2, PIGT, BMPR1A, ANO5, RNASEH1, COL11A2, TRAPPC2, GNPTG, ALB, VANGL1, NLRP12, MYH7, STK11, SPINK1, FMR1, SLCO2A1, PNPLA2, MLYCD, HLA-DQA1, POMGNT1, ALAD, MEFV, TNXB, CECR1, CNBP, CCDC78, MATN3, COL2A1, TRPA1, SERPING1, CYP2R1, MYOT, PRSS2, MFN2, SCN4A, SLC26A2, ALDOB, COPA, MT-TL1, CLCN5, PGM1, SQSTM1, CPOX, PTRF, FKRP, LPIN1, RYR1, HGD, HEXB, AGXT, HADHA, COMP, MVK, FSHR, PSMB8, MAFB, CEL, JAK2, C1R, LDHA, ABCG8, TNFRSF1A, TMEM173, NLRC4, GUCY2C, CASQ1, TNFRSF11A, CLDN16, TRIM32, VCP, COL9A1, TRAPPC11, PIGR, CAV3, STIM1, PRKRA, HMBS, SMAD4, SPAST, ENO3, PHKA1, CYP27B1, TAZ, DMD, VHL, KIF1B, PYGM, HES7, CLCN1, PPOX, MMP2, VDR, FHL1, DTNBP1, SEC63, HLA-DQB1, SLC25A4, DNA2, CTRC, IL1RN, POLG2, NOD2, CHST3, SH2B3, NME1, LRP5, FGF23, PRKCD, TBX6, ACADVL, PRKCSH, ABCG5, SLC34A3, TYMP, LPL, CFTR, TGFB1, HADHB, HLA-B, TBX18, TRPS1, SCN9A, POLE, RBCK1, COL17A1, PLCG2, C10orf2, IL6, GBA, GLA, PDGFRA, F12, HPS1, ASPN, POLG, ATXN3, TMEM43, EPOR, HTRA1, NR3C1, NLRP3, SLC12A3, HFE, PRDM5, HPGD



GO terms for Biological Process
--> -->
 
 
<type 'exceptions.TypeError'>
Python 2.7.9: /usr/bin/python
Wed Jun 10 14:02:03 2020

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /usr/lib/cgi-bin/phenpath/class_page_mkstatic.py in ()
    307         print '<p> This is a cluster of phenotypes following the categories of HPO </p>'
    308         initial_description(cla,HPOid2mim,HPOid2gene)
=>  309         myGO_BP,myGO_MF,myGO_CC=main_program(cla,name,HPOid2gene[cla],HPOid2mim[cla],True)
    310         create_metadata(cla,name,HPOid2gene[cla],HPOid2mim[cla],myGO_BP,myGO_MF,myGO_CC)
    311     elif cla=="HP:0000001":
myGO_BP = set([]), myGO_MF = set([]), myGO_CC = set([]), main_program = <function main_program>, cla = 'HP:0025142', name = 'CONSTITUTIONAL_SYMPTOM', HPOid2gene = {'HP:0000001': set(['A2M', 'A4GALT', 'AAAS', 'AAGAB', 'AARS', 'AARS2', ...]), 'HP:0000002': set(['AAAS', 'AARS', 'AASS', 'ABAT', 'ABCB11', 'ACAN', ...]), 'HP:0000003': set(['AMER1', 'B9D1', 'KAT6B', 'MBTPS2', 'OFD1', 'PAX2', ...]), 'HP:0000005': set(['A2M', 'A4GALT', 'AAAS', 'AAGAB', 'AARS', 'AARS2', ...]), 'HP:0000006': set(['A2M', 'A4GALT', 'AAGAB', 'AARS', 'ABCA1', 'ABCA4', ...]), 'HP:0000007': set(['AAAS', 'AARS', 'AARS2', 'AASS', 'ABAT', 'ABCA1', ...]), 'HP:0000008': set(['AARS2', 'AGPAT2', 'AIP', 'AIRE', 'AKT1', 'APC', ...]), 'HP:0000009': set(['ABCD1', 'ACTG2', 'ADH1C', 'AFF4', 'ALDH18A1', 'ALS2', ...]), 'HP:0000010': set(['BTK', 'CFI', 'CIITA', 'CLDN16', 'CLDN19', 'FLVCR1', ...]), 'HP:0000011': set(['ARNT2', 'GBE1', 'GJA1', 'MNX1', 'VANGL1', 'WFS1']), ...}, HPOid2mim = {'HP:0000001': set(['100070', '100100', '100300', '100800', '101000', '101200', ...]), 'HP:0000002': set(['100800', '101400', '101800', '102370', '102500', '103580', ...]), 'HP:0000003': set(['107480', '120330', '143400', '300209', '300373', '308205', ...]), 'HP:0000005': set(['100100', '100300', '100800', '101000', '101200', '101400', ...]), 'HP:0000006': set(['100300', '100800', '101000', '101200', '101400', '101600', ...]), 'HP:0000007': set(['100100', '100300', '102530', '102700', '103050', '105400', ...]), 'HP:0000008': set(['101200', '107480', '109400', '110100', '114500', '119500', ...]), 'HP:0000009': set(['105210', '107480', '109150', '113650', '118450', '120330', ...]), 'HP:0000010': set(['176450', '209920', '220100', '236730', '248190', '248250', ...]), 'HP:0000011': set(['164200', '176450', '222300', '263570', '600145', '615926']), ...}, builtin True = True
 /usr/lib/cgi-bin/phenpath/class_page_mkstatic.py in main_program(cla='HP:0025142', name='CONSTITUTIONAL_SYMPTOM', gene_set=set(['ABCG5', 'ABCG8', 'ACADVL', 'AGK', 'AGXT', 'ALAD', ...]), mim_set=set(['106100', '106300', '109150', '120100', '121300', '122400', ...]), HPO=True)
    190         else:
    191             myresult=main_table_printer(cla,name,"allclass2BP_NETGE",gene_set,"GOBP",mim_set,gene2mim_mapped,gene2chrom,root_GOBP_set)
=>  192             summary_shared_other_pages("GO terms for Biological Process",myresult,cla,"GOBP",name)
    193             myresult=main_table_printer(cla,name,"allclass2MF_NETGE",gene_set,"GOMF",mim_set,gene2mim_mapped,gene2chrom,root_GOMF_set)
    194             summary_shared_other_pages("GO terms for Molecular Function",myresult,cla,"GOMF",name)
global summary_shared_other_pages = <function summary_shared_other_pages>, myresult = ('<table id=allclass2BP_NETGE class="display"> <th...e=HLA-B">HLA-B</a></p></td></tr></tbody> </table>', set(['GO:0001501', 'GO:0001910', 'GO:0001912', 'GO:0001914', 'GO:0001916', 'GO:0002474', ...])), cla = 'HP:0025142', name = 'CONSTITUTIONAL_SYMPTOM'
 /usr/lib/cgi-bin/phenpath/class_page_mkstatic.py in summary_shared_other_pages(titlename='GO terms for Biological Process', content=('<table id=allclass2BP_NETGE class="display"> <th...e=HLA-B">HLA-B</a></p></td></tr></tbody> </table>', set(['GO:0001501', 'GO:0001910', 'GO:0001912', 'GO:0001914', 'GO:0001916', 'GO:0002474', ...])), phen='HP:0025142', onto_name='GOBP', cla_name='CONSTITUTIONAL_SYMPTOM')
    110         myfile.write("<h1>"+ " ".join(cla_name.split("_")) +"</h1>")             
    111 
=>  112         myfile.write(content)   
    113         myfile.write('</body><footer><p>Contact information: giulia.babbi3@unibo.it <a style="float:right"> <!-- Release 12-05-2017 --> </a></p></footer></html>')
    114 
myfile = <open file '/var/www/phenpath/class_static/HP:0025142_GOBP_static.html', mode 'w'>, myfile.write = <built-in method write of file object>, content = ('<table id=allclass2BP_NETGE class="display"> <th...e=HLA-B">HLA-B</a></p></td></tr></tbody> </table>', set(['GO:0001501', 'GO:0001910', 'GO:0001912', 'GO:0001914', 'GO:0001916', 'GO:0002474', ...]))

<type 'exceptions.TypeError'>: expected a character buffer object
      args = ('expected a character buffer object',)
      message = 'expected a character buffer object'